1
0
forked from erosita/uds

Many changes

This commit is contained in:
2024-03-18 14:46:38 +03:00
parent 4e5f88e166
commit afe3862cda
24 changed files with 55736 additions and 236 deletions

View File

@@ -35,14 +35,14 @@ outfile_dir=root_path+'/products'
create_folder(outfile_dir)
index=5 # select energy band
index=3 # select energy band
do_init = False
do_init = True
do_merge = True
do_rate = False
do_adapt = False # requires CIAO
do_adapt = True # requires CIAO
vign=True
vign=False
vignetting = 'vign' if (vign==True) else 'novign'
events=[]
@@ -61,8 +61,8 @@ for tmkey in keylist_tm.keys():
do_init=do_init,
do_obsmode=False,
do_center=False,
do_evtool=False,
do_expmap=True,
do_evtool=True,
do_expmap=False,
vign=vign,
ra_cen=ra_cen, de_cen=de_cen,
emin_kev=emin_kev[index],

View File

@@ -43,6 +43,8 @@ import sys, os, os.path, time, subprocess
from pathlib import Path
import numpy as np
import glob
from multiprocessing import Pool
from os.path import dirname
import inspect
import uds
@@ -59,24 +61,29 @@ infile_dir=root_path+'/data/processed'
outfile_dir=root_path+'/products'
create_folder(outfile_dir)
do_init = True
do_ermask = True
run_Pool=False
do_erbox1 = True # local mode
do_erbackmap1 = True #
do_erbox2 = True # map mode, with background map
do_erbackmap2 = True #
do_erbox3 = True # map mode, with background map
do_erbackmap3 = True #
do_init = False
do_ermask = False
do_ermldet = True
do_catprep = True
do_erbox1 = False # local mode
do_erbackmap1 = False #
do_erbox2 = False # map mode, with background map
do_erbackmap2 = False #
do_erbox3 = False # map mode, with background map
do_erbackmap3 = False #
do_ermldet = False
do_catprep = False
do_cross_match = False
do_wcs_match = True # Chandra task
do_wcs_update = True # Chandra task
do_astro_corr = False # search optimal shift
do_astro_update = True
eband_selected=[0,1,2,3,4]
do_wcs_match = False # Chandra task -- DEPRECATED
do_wcs_update = False # Chandra task -- DEPRECATED
eband_selected=[5]
vign=True
vignetting = 'vign' if (vign==True) else 'novign'
@@ -95,6 +102,11 @@ def runme(datakey):
cheesemask=[]
bkgimage=[]
srcmaps=[]
print(datakey)
print('module name:', __name__)
print('parent process:', os.getppid())
print('process id:', os.getpid())
for ii in range(len(eband_selected)):
index=eband_selected[ii]
@@ -114,10 +126,10 @@ def runme(datakey):
expmaps.append(outfile_expmap)
events.append(outfile_evtool)
"""
After astrometry-corrected files (*.attcorr.fits) are obtained, one can take them as original, in order to check the full chain:
events.append(outfile_evtool.replace(".fits", ".attcorr.fits"))
"""
# After astrometry-corrected files (*.attcorr.fits) are obtained, one can take them as original, in order to check the full chain:
#events.append(outfile_evtool.replace(".fits", ".attcorr.fits"))
""" Detmask """
@@ -339,12 +351,13 @@ def runme(datakey):
]
if(do_ermldet==True):
test_exe('ermldet')
remove_file(mllist)
remove_file(srcmap)
os.system((" ").join(cmd))
print((" ").join(cmd))
#save_ermldet_ds9reg(mllist,scale=60*60)
save_ermldet_ds9reg(mllist,scale=60*60)
catprep="{}_SourceCatalog_en{}{}".format(os.path.join(outfile_dir,datakey), eband[index], outfile_post)
catprep_en0="{}_SourceCatalog_en{}{}".format(os.path.join(outfile_dir,datakey), eband[0], outfile_post)
@@ -359,12 +372,24 @@ def runme(datakey):
if(do_cross_match==True):
crossmatch_shu2019(catprep,dlmin=10,refimage=events[ii],crval=wcslist[datakey],
catalog=root_path+"/data/Gaia_unWISE/Gaia_unWISE_UDS.fits.catalog")
catalog=root_path+"/data/Gaia_unWISE/Gaia_unWISE_UDS.fits.catalog",errlim=5.0)
if(do_wcs_match==True and eband[index]==0):
if(do_astro_corr==True and eband[index]=='0'):
""" run astro_corr for 0.3-2.3 keV only """
wcs_astro_corr(catprep)
#wcs_match_ciao(catprep, method='rst',radius=12,residlim=0,residtype=0,residfac=1)
if(do_astro_update==True):
""" run astro_corr for 0.3-2.3 keV only """
attcorr=wcs_update_shift(events[ii],flog=catprep_en0.replace(".fits", ".shift.log"))
do_evtool_esass(evfile=attcorr,outfile=attcorr,rmlock=False, do_center=True, ra_cen=ra_cen, de_cen=de_cen)
if(do_wcs_match==True and eband[index]=='0'):
""" run wcs_match for 0.3-2.3 keV only """
wcs_match_ciao(catprep, method='rst',radius=12,residlim=5)
wcs_match_ciao(catprep, method='trans',radius=12,residlim=5)
#wcs_match_ciao(catprep, method='rst',radius=12,residlim=0,residtype=0,residfac=1)
if(do_wcs_update==True):
""" use 0.3-2.3 keV transform matrix for all other bands """
attcorr=wcs_update_ciao(events[ii],crval=wcslist[datakey],transformfile=catprep_en0.replace(".fits", ".xfm"),clean=False)
@@ -372,13 +397,28 @@ def runme(datakey):
"""
testing
# individual run, testing
runme("tm7_obs_1")
runme("tm5_obs_1")
runme("tm6_scan_1")
"""
for tmkey in keylist_tm.keys():
print("TM{} in work... init events".format(tmkey))
for datakey in keylist_tm[tmkey]:
print("--> {}".format(datakey))
runme(datakey)
if(run_Pool==True):
# parallel run
items=[]
for tmkey in keylist_tm.keys():
for datakey in keylist_tm[tmkey]:
items.append(datakey)
with Pool() as pool:
pool.map(runme, items)
else:
# conventional run
for tmkey in keylist_tm.keys():
for datakey in keylist_tm[tmkey]:
print("--> {}".format(datakey))
runme(datakey)
#sys.exit()

View File

@@ -13,7 +13,7 @@
ВЫЗОВ:
esass
./01_mosaics.py
./04_mosaics.py
УПРАВЛЕНИЕ:
@@ -74,37 +74,39 @@ local_run = False
outkey="tm0"
do_init = False
do_merge = False
do_detmask = False
do_expmap = False
do_erbox1 = False # local mode
do_erbackmap1 = False #
do_erbox2 = False # map mode, with background map
do_erbackmap2 = False #
do_erbox3 = False # map mode, with background map
do_erbackmap3 = False #
do_init = True
do_merge = True
do_detmask = True
do_expmap = True
do_erbox1 = True # local mode
do_erbackmap1 = True #
do_erbox2 = True # map mode, with background map
do_erbackmap2 = True #
do_erbox3 = True # map mode, with background map
do_erbackmap3 = True #
do_ersensmap = False
do_ermldet = False
do_ermldet = True
do_fixcat = False # only for index=0
do_fixxmm = True # only for index=0
do_fixxmm = False # prepare forced photometry, only for index=0
do_apetool = False
do_catprep = False
do_catprep = True
do_filter_catalog = False
do_cross_match = False
index=0
index=3
forced=False
""" If forced=True, take input catalog from energy range en0 """
comm='-xmm' # for 4XMM-DR12 forced photometry use '-xmm'
comm='' # for 4XMM-DR12 forced photometry use '-xmm'
vign=True
vignetting = 'vign' if (vign==True) else 'novign'
attcorr=True
events=[]
expmaps=[]
bkgmaps=[]
@@ -113,7 +115,7 @@ for tmkey in keylist_tm.keys():
for datakey in keylist_tm[tmkey]:
print("--> {}".format(datakey))
""" Подготавливаем списки событий индивидуальных наблюдений """
outfile_evtool,outfile_expmap=init_events(key=datakey,
outfile_evtool,outfile_expmap=init_events(key=datakey,attcorr=attcorr,
eband_index=eband[index],
infile_dir=infile_dir,
outfile_dir=outfile_dir,
@@ -121,7 +123,7 @@ for tmkey in keylist_tm.keys():
do_obsmode=False,
do_center=False,
do_evtool=True,
do_expmap=True,
do_expmap=False,
vign=vign,
ra_cen=ra_cen, de_cen=de_cen,
emin_kev=emin_kev[index],
@@ -138,7 +140,7 @@ if(do_merge==True):
do_evtool_esass(events=events, outfile=outfile_evtool)
""" makes detmask from TM exposures """
""" makes detmask from TM exposures """
detmask="{}/{}_DetectorMask_en{}{}".format(outfile_dir,
outkey,
eband[index],
@@ -256,19 +258,20 @@ if(forced==True):
srcmap="{}_SourceMap_en{}.forced{}{}".format(os.path.join(outfile_dir,outkey), eband[index], comm, outfile_post)
""" for en1,2,3,6 give mllist from en0 as input """
boxlist3="{}_MaxLikSourceList_en{}.forced{}{}".format(os.path.join(outfile_dir,outkey), eband[0], comm, outfile_post)
if(index==0):
boxlist3="{}_MaxLikSourceList_en{}.fixed{}{}".format(os.path.join(outfile_dir,outkey), eband[0], comm, outfile_post)
if not (os.path.exists(boxlist3)):
print("{} not found. Run do_fixcat=True, index=0, forced=False".format(boxlist3))
sys.exit()
#boxlist3="{}_MaxLikSourceList_en{}.forced{}{}".format(os.path.join(outfile_dir,outkey), eband[0], comm, outfile_post)
#if(index==0):
boxlist3="{}_MaxLikSourceList_en{}.fixed{}{}".format(os.path.join(outfile_dir,outkey), eband[0], comm, outfile_post)
if not (os.path.exists(boxlist3)):
print("{} not found. Run do_fixcat=True, index=0, forced=False".format(boxlist3))
sys.exit()
add_specific_columns(boxlist3)
fitpos_flag="fitpos_flag=no"
fitext_flag="fitext_flag=no"
nmulsou = "nmulsou=1"
nmaxfit="nmaxfit=1"
""" don't allow ermpldet to split sources """
nmaxfit="nmaxfit=10"
multrad="multrad=15."
cutrad="cutrad=15."
if(index == 3 or index == 6):
""" for hard band take unvignetted background """
outfile_backmap3="{}_BackMap3_en{}.{}{}".format(os.path.join(outfile_dir,outkey), eband[index], "novign", outfile_post)
@@ -281,10 +284,12 @@ else:
fitext_flag="fitext_flag=yes"
nmulsou = "nmulsou=2"
nmaxfit="nmaxfit=4"
multrad="multrad=20."
cutrad="cutrad=20."
""" allow ermpldet to split sources (no more than two) """
cmd=["ermldet",
"mllist=%s" %(mllist),
"mllist={}".format(mllist),
"boxlist=%s" %(boxlist3),
"images=\'{}\'".format(outfile_evtool),
"expimages=\'{}\'".format(outfile_expmap),
@@ -297,8 +302,8 @@ cmd=["ermldet",
"likemin=0.",
"extlikemin=5.",
"compress_flag=N",
"cutrad=15.",
"multrad=20.",
cutrad,
multrad,
"extmin=2.0",
"extmax=35.0",
#"bkgima_flag=Y", looks outdated
@@ -337,17 +342,22 @@ if(do_ersensmap==True):
"""
if(do_ermldet==True):
test_exe('ermldet')
if(vign==False):
print('Run ermldet with vignetted exposure!')
sys.exit()
remove_file(mllist)
remove_file(srcmap)
print(cmd)
runme(cmd, local_run=local_run)
#correct_fluxerr_ermldet_forced(mllist)
print(cmd)
save_ermldet_ds9reg(mllist,scale=60*60,label='det_like')
save_ermldet_ds9reg(mllist,scale=60*60,label='id_src')
correct_fluxerr_ermldet_forced(mllist)
if(forced==True):
result = check_ermldet_forced(mllist)
""" for a some reason, for an arbitrary energy band, ermldet break order of sources. Do this forced correction. """
# for a some reason, for an arbitrary energy band, ermldet break order of sources. Do this forced correction.
if(result == False):
correct_srcid_ermldet_forced(mllist)
@@ -359,32 +369,22 @@ if(do_fixcat==True):
print("ERROR: You can fix only non-forced catalog for en0.")
sys.exit()
srcs_remove=[174,
90,
299,
300,
504,
215,
401,
20,] # keep 671 as unclassified extended source
srcs_add = {'4XMM J021925.4-042647':[34.8559099,-4.4465007, 1.366], # 147
'4XMM J021922.8-042655':[34.8451832,-4.4487901, 1.958], # 147
'4XMM J021929.4-043224':[34.8728586,-4.5400022, 0.660], # 90
'4XMM J021931.2-043222':[34.8801169,-4.5395495, 2.561], # 90
'4XMM J021911.2-050550':[34.7968110,-5.0972990, 0.732], # 504
'4XMM J021919.3-050511':[34.8307176,-5.0864242,4.988], # 504
'4XMM J021911.5-050501':[34.7981099,-5.0837146,6.834], # 504
'4XMM J021658.9-044900':[34.2455964,-4.8168126,4.449], # 300
'4XMM J021659.2-044945':[34.2468704,-4.8291892,1.548], # 300
'4XMM J021812.2-045814':[34.5510753,-4.9705972,0.550], # 215
'4XMM J021812.0-045813':[34.5502698,-4.9703004,0.497], # 215
'4XMM J021912.6-052756':[34.8028459,-5.4656239,0.579], # 401
'4XMM J021705.5-042254':[34.2730294,-4.3816810,0.288], # 20
'4XMM J021705.3-042314':[34.2720952,-4.3873162,0.587], # 20
'4XMM J021827.2-045456':[34.6134256,-4.9157208,0.252],
'4XMM J021831.3-045504':[34.6306930,-4.9178676,0.242],
'4XMM J021925.4-045201':[34.8558373,-4.8671200,0.529],
srcs_remove=[341,446,346,96]
srcs_add = {'4XMM J021738.8-051257':[34.4117002, -5.2159135, 0.624],# 341
'4XMM J021733.8-051311':[34.3910215,-5.2199877,2.247],# 341
'4XMM J021929.4-051220':[34.8725460,-5.2056849,1.074],#446
'4XMM J021930.7-051225':[34.8782267,-5.2072112,0.624],# 446
'4XMM J021945.2-045331':[34.9383593,-4.8919843,1.538],#346
'4XMM J021929.4-043224':[34.8728586,-4.5400022,0.659555],#96
#'4XMM J021929.4-043224':[34.8728586,-4.5400022, 0.660],
#'4XMM J021831.8-050059':[34.6328841,-5.0163909,1.529],
#'4XMM J022131.1-050027':[35.3797879,-5.0075498,0.941],
#'4XMM J022129.5-045914':[35.3732136,-4.9874025,0.332],
#'4XMM J022026.3-050251':[35.1098619,-5.0476199,0.551],
#'4XMM J021925.4-042647':[34.8559099,-4.4465007,1.366],
#'4XMM J021910.9-045108':[34.7954311,-4.8522901,0.898],
#'4XMM J021945.2-045331':[34.9383593,-4.8919843,1.538],
#'4XMM J021733.8-051311':[34.3910215,-5.2199877,2.247],
}
fix_catalog(mllist=mllist,refimage=outfile_evtool, srcs_remove=srcs_remove, srcs_add=srcs_add)
"""
@@ -451,7 +451,7 @@ if(do_filter_catalog==True):
#filter_mllist(mllist,expcut=5000.0,dlcut=10.0,dlmin=10,dlmax=10000)
""" works the same """
filter_catprep(catprep,expcut=5000.0,dlmin=10,dlmax=10000,outkey='bright')
filter_catprep(catprep,expcut=5000.0,dlmin=6,dlmax=10,outkey='faint')
#filter_catprep(catprep,expcut=5000.0,dlmin=6,dlmax=10,outkey='faint')
if(do_cross_match==True):
crossmatch_shu2019(catprep,dlmin=10,refimage=outfile_evtool,crval=[ra_cen, de_cen],

View File

@@ -73,20 +73,34 @@ outkey="tm0"
outfile_srctool="{}_SrcTool_".format(outkey)
do_init = False
do_merge = False
do_srctool = False
do_grppha = False
do_ecf_calc = False # for all bands
do_ecf_print = False # for all bands
do_catalog = False
do_extended = False
do_ds9reg = False
do_xmm_catalog = False
do_xmm_final = True
do_init = False
do_merge = False
do_srctool = False
do_grppha = False
do_ecf_calc = False # for all bands
do_ecf_print = False # for all bands
do_flux_calc = False # for all bands
do_catalog = False
do_extended = False
do_ds9reg = False
do_euds_final = False
do_euds_dr12 = False # crossmatch eUDS with DR12
do_euds_stat = False
do_euds_cds = False
do_xmm_catalog = False
do_xmm_final = False
do_xmm_xmatch = False
do_xmm_ds9reg = False
do_xmm_cds = False
do_euds_cosmatch = True
do_cross_check = False # Check whether all E3,E6 sources are detected in E0
index=0
""" работаем именно в этом диапазоне, чтобы спектры покрывали все энергии """
""" чтобы спектры покрывали все энергии работаем в диапазоне 5 """
vign=True
vignetting = 'vign' if (vign==True) else 'novign'
@@ -99,7 +113,7 @@ for tmkey in keylist_tm.keys():
for datakey in keylist_tm[tmkey]:
print("--> {}".format(datakey))
""" Подготавливаем списки событий индивидуальных наблюдений """
outfile_evtool,outfile_expmap=init_events(key=datakey,
outfile_evtool,outfile_expmap=init_events(key=datakey,attcorr=True,
eband_index=eband[index],
infile_dir=infile_dir,
outfile_dir=outfile_dir,
@@ -144,19 +158,21 @@ if(do_srctool==True):
"eventfiles={}".format(outfile_evtool),
"prefix=\'{}\'".format(os.path.join(srctool_dir,outfile_srctool)),
"suffix=\'{}\'".format(suffix_srctool),
"srccoord={}".format(catprep),
"srccoord={}".format("../products/eUDS_for_srctool.fits"),
# the same as original file eUDS.fits, but changed ML_CTS --> ML_CTS_0, ML_BKG --> ML_BKG_0, ML_EXP --> ML_EXP_0
#"srcreg=\'fk5;circle * * 60s\'",
#"backreg=\'fk5;annulus * * 90s 120s\'",
"srcreg=AUTO",
"backreg=AUTO",
"clobber=yes",]
os.system((" ").join(cmd))
print((" ").join(cmd))
#os.system((" ").join(cmd))
#print((" ").join(cmd))
if(do_grppha==True):
group_spectra("{}/*_SourceSpec_*.fits".format(srctool_dir))
group_spectra("{}/*020_SourceSpec_*.fits".format(srctool_dir))
ecfout="{}_SampleFlux.pickle".format(os.path.join(outfile_dir,outkey))
ecfout="{}_SampleFlux_v1.pickle".format(os.path.join(outfile_dir,outkey))
if(do_ecf_calc==True):
calc_ecf("{}/tm0_SrcTool_020_ARF_?????.fits".format(srctool_dir),
@@ -165,16 +181,27 @@ if(do_ecf_calc==True):
if(do_ecf_print==True):
print_ecf(infile=ecfout, emin=emin_kev, emax=emax_kev, eband=eband, skipfrac=10.0)
index=0
fluxout="{}_SherpaFlux.pickle".format(os.path.join(outfile_dir,outkey))
if(do_flux_calc==True):
calc_flux("{}/tm0_SrcTool_020_ARF_?????.fits".format(srctool_dir),
catprep=catprep, emin=emin_kev, emax=emax_kev, eband=eband, outfile=ecfout, simnum=100)
#index=0
catprep="{}_SourceCatalog_en{}{}".format(os.path.join(outfile_dir,outkey), eband[index], outfile_post)
rawcat="{}_SourceCatalog_en{}.pickle".format(os.path.join(outfile_dir,outkey), eband[index])
if(do_catalog==True):
forced_xmm_sources="{}_MaxLikSourceList_en{}.xmm.pickle".format(os.path.join(outfile_dir,outkey), eband[index])
with open(forced_xmm_sources, 'rb') as f:
print("Reading forced XMM sources from {}".format(forced_xmm_sources))
srcs_forced = pickle.load(f)
print()
print(srcs_forced)
print()
make_catalog(infile='../products/tm0_SourceCatalog_en0.forced.fits', rawcat=rawcat, dlmin=10.0, dlmax=100000, ext_like=1000,
make_euds_catalog(infile='../products/tm0_SourceCatalog_en0.forced.fits', rawcat=rawcat, dlmin=10.0, dlmax=100000, ext_like=1000,
emin=emin_kev[index], emax=emax_kev[index], eband=eband[index],
infile_en00cat=catprep,
infile_en01cat='../products/tm0_SourceCatalog_en1.forced.fits',
@@ -194,7 +221,27 @@ if(do_extended==True):
make_extended(infile=rawcat,outreg="{}_ExtendedCat_en{}.reg".format(os.path.join(outfile_dir,outkey), eband[index]))
if(do_ds9reg==True):
make_final_ds9reg(infile=rawcat,outreg="{}_FinalCat_dl10.reg".format(os.path.join(outfile_dir,outkey)))
#make_final_ds9reg(infile=rawcat,outreg="{}_FinalCat_dl10.reg".format(os.path.join(outfile_dir,outkey)))
make_final_ds9reg(infile=rawcat,scale=(60*60)/10,outreg="{}_FinalCat_dl10_talk.reg".format(os.path.join(outfile_dir,outkey)))
if(do_euds_final==True):
""" make final eUDS catalog """
final_euds_catalog(infile=rawcat, outfile_fits='../products/eUDS.fits')
if(do_euds_dr12==True):
crossmatch_dr12('../products/eUDS.fits', catalog=root_path+"/data/4XMM-DR12/4XMM_DR12cat_slim_v1.0_UDS.fits.catalog", devmax=15)
if(do_euds_stat==True):
make_euds_stat(infile="../products/eUDS.fits",fluxlim=5e-14)
if(do_euds_cds==True):
make_euds_cds(infile="../products/eUDS.fits",outfile='../products/eUDS.cds')
if(do_cross_check==True):
""" cross check final eUDS catalog """
cross_check_euds(infile=catprep, euds='../products/eUDS.fits', outkey="../products/en{}_FinalCat_dl10".format(index))
if(do_xmm_catalog==True):
""" complile raw forced XMM catalog """
@@ -211,3 +258,27 @@ if(do_xmm_final==True):
""" make final XMM-forced catalog """
final_xmm_catalog(infile='../products/tm0_4XMM-DR12.pickle', outfile_fits='../products/eUDS_4XMM-DR12.fits')
if(do_xmm_xmatch==True):
""" cross-match XMM-forced catalog
outfile_cvs contains 0.3-2.3 keV eUDS flux (col1=flux,col2=err) vs. 4XMM-DR12 flux (col3=flux, col4=err)
XMM flux was converted from 0.2-2.0 keV to 0.3-2.3 keV using wabs*powerlow with wabs=0.02 gamma=2.0
"""
final_xmm_xmatch(infile='../products/eUDS_4XMM-DR12.fits',
xmmslim='../data/4XMM-DR12/4XMM_DR12cat_slim_v1.0_UDS.fits.catalog',
xmmfull='../data/4XMM-DR12/4XMM_DR12cat_v1.0_UDS.fits.catalog',
xmmlim=2e-14,
outfile_flux="../products/eUDS_4XMM-DR12.flux.csv")
if(do_xmm_ds9reg==True):
""" show XMM-forced catalog """
make_xmm_ds9reg_confused(infile='../products/eUDS_4XMM-DR12.fits', outfile='../products/eUDS_4XMM-DR12.confused.reg')
""" obsolete """
if(do_xmm_cds==True):
make_xmm_cds(infile="../products/eUDS_4XMM-DR12.fits", outfile='../products/eUDS_4XMM-DR12.cds')
if(do_euds_cosmatch==True):
""" prepare eUDS catalog for CosMatch (Mescheryakov) """
make_euds_cosmatch(infile='../products/eUDS.fits', outfile='../products/eUDS-CosMatch.fits')

View File

@@ -45,10 +45,10 @@ import glob
from os.path import dirname
import inspect
import uds
from scipy.stats import norm
import matplotlib.pyplot as plt
import pandas as pd
from uds.utils import *
from uds.config import *
@@ -76,7 +76,13 @@ outkey="tm0"
outfile_srctool="{}_SrcTool_".format(outkey)
do_flux_distr = False
do_sens_curve = True
do_sens_curve = False
do_4xmm_ratio = False
do_euds_radec_err = False
do_euds_dr12_diff = False
do_euds_dr12_stat = True
do_print_ecf = False
index=0
@@ -87,8 +93,9 @@ if not (os.path.isfile(catalog)==True):
sys.exit()
if(do_flux_distr==True):
data, logbins = get_log_distr(infile=catalog, field='ml_rate', minval=1e-3, maxval=2)
data, logbins, mean, median = get_log_distr(infile=catalog, field='ml_rate', minval=1e-3, maxval=2)
fig, ax = plt.subplots()
for axis in ['top','bottom','left','right']:
ax.spines[axis].set_linewidth(1)
@@ -101,9 +108,9 @@ if(do_flux_distr==True):
plt.yscale('log')
plt.savefig(catalog.replace("main.selected.csv", "ml_rate.png"), bbox_inches='tight')
plt.close(fig)
data, logbins = get_log_distr(infile=catalog, field='ml_flux', minval=1e-15, maxval=2e-12)
data, logbins, mean, median = get_log_distr(infile=catalog, field='ml_flux', minval=1e-15, maxval=2e-12)
fig, ax = plt.subplots()
for axis in ['top','bottom','left','right']:
ax.spines[axis].set_linewidth(1)
@@ -143,11 +150,12 @@ if(do_sens_curve==True):
ax.set_xlim([3e-16,1e-13])
ax.set_ylim([0.3,160])
plt.plot(limflux_dl10,area_dl10, color="black", linestyle='solid',label="eUDS (DL10)")
plt.plot(limflux_dl6,area_dl6, color="black", linestyle='dashed', label="eUDS (DL6)")
df = pandas.read_csv("../data/surveys/eFEDS.dat",header=None,names=['limflux','area'])
plt.plot(df['limflux'],df['area'], color="brown", linestyle='solid',label="eFEDS (DL6)")
plt.plot(limflux_dl10,area_dl10, color="black", linestyle='solid',label="eUDS (DL10)")
plt.plot(limflux_dl6,area_dl6, color="black", linestyle='dashed', label="eUDS (DL6)")
df = pandas.read_csv("../data/surveys/cosmos-legacy.dat",header=None,names=['limflux','area'])
plt.plot(df['limflux'],df['area'], color="blue", linestyle='solid',label="COSMOS Legacy")
@@ -187,3 +195,251 @@ if(do_sens_curve==True):
Model Flux 0.00028334 photons (3.4012e-13 ergs/cm^2/s) range (0.30000 - 2.3000 keV)
Model Flux 0.0001619 photons (2.4336e-13 ergs/cm^2/s) range (0.50000 - 2.0000 keV)
"""
if(do_4xmm_ratio==True):
filename="../products/eUDS_4XMM-DR12.flux.csv"
data, logbins, mean, median = get_log_distr(infile=filename, field='ratio', minval=8e-2, maxval=60, nbin=60)
print("Median {}".format(median))
print(" Mean {}".format(mean))
print("Ntotal {}".format(len(data)))
fig, ax = plt.subplots()
#plt.figure(figsize=(5,5))
#plt.figure().set_figheight(3.6)
#plt.rcParams['figure.figsize'] = [4, 4]
for axis in ['top','bottom','left','right']:
ax.spines[axis].set_linewidth(1)
ax.tick_params(axis="both", width=1, labelsize=14)
plt.hist(data, bins=logbins, histtype='step', color='blue', linewidth=1, linestyle='solid')
plt.axvline(x = median, color = 'black', label = 'Median value', linestyle='dashed')
plt.xlabel('Energy flux ratio',fontsize=14, fontweight='normal')
plt.ylabel('Number',fontsize=14, fontweight='normal')
plt.grid(visible=True)
plt.xscale('log')
plt.yscale('log')
plt.savefig(filename.replace(".csv", ".distr.png"), bbox_inches='tight')
plt.close(fig)
df = pandas.read_csv(filename)
fig, ax = plt.subplots()
#plt.rcParams['figure.figsize'] = [4, 4]
#plt.figure(figsize=(5,5))
#plt.figure().set_figheight(4)
for axis in ['top','bottom','left','right']:
ax.spines[axis].set_linewidth(1)
ax.tick_params(axis="both", width=1, labelsize=14)
plt.plot(np.array([1e-17,1e-11]), np.array([1e-17,1e-11]), linestyle = 'solid', color='black')
plt.plot(np.array([1e-17,1e-11]), 10*np.array([1e-17,1e-11]), linestyle = 'dashed', color='black')
plt.plot(np.array([1e-17,1e-11]), 0.1*np.array([1e-17,1e-11]), linestyle = 'dotted', color='black')
#plt.plot(np.array([1e-17,1e-11]), median*np.array([1e-17,1e-11]), linestyle = 'dashed', color='blue')
plt.errorbar(df['dr12_flux'],df['euds_flux'], yerr=df['euds_flux_err'], xerr=df['dr12_flux_err'], linestyle='None', color='black', label='Errors')
plt.plot(df['dr12_flux'],df['euds_flux'], marker="o", linewidth=1, linestyle='None', markerfacecolor='Gold',markeredgecolor="black",)
#plt.axvline(x = median, color = 'black', label = 'Median value', linestyle='dashed')
plt.xlabel('4XMM-DR12 Energy flux (erg s$^{-1}$ cm$^{-2}$)',fontsize=14, fontweight='normal')
plt.ylabel('eUDS Energy flux (erg s$^{-1}$ cm$^{-2}$)',fontsize=14, fontweight='normal')
plt.grid(visible=True)
plt.xlim(2e-16,1e-12)
plt.ylim(1e-15,2e-12)
plt.xscale('log')
plt.yscale('log')
plt.savefig(filename.replace(".csv", ".png"), bbox_inches='tight')
plt.close(fig)
if(do_euds_radec_err==True):
filename="../products/eUDS.fits"
ecat={}
hdul = fits.open(filename)
etab = hdul[1].data
hdul.close()
x=[]
y=[]
for s in etab:
if ("XMM" in s['DR12_IAU_NAME']):
print("Skip ",s['DR12_IAU_NAME'])
continue
if (s['EXT_LIKE']>0.0):
print("Skip extended ",s['ID_SRC'])
continue
x.append(s['DET_LIKE'])
y.append(s['RADEC_ERR'])
fig, ax = plt.subplots()
for axis in ['top','bottom','left','right']:
ax.spines[axis].set_linewidth(1)
ax.tick_params(axis="both", width=1, labelsize=14)
ax.set_xlim([10,10000])
ax.set_ylim([0.1,40])
plt.plot(x,y,".", color="gold", markersize=12, markeredgewidth=1.5, markeredgecolor="black")
plt.xlabel('DET_LIKE',fontsize=14, fontweight='normal')
plt.ylabel('RADEC_ERR (arcsec)',fontsize=14, fontweight='normal')
plt.grid(visible=True)
plt.xscale('log')
plt.yscale('log')
png="../products/en0_radec_err.png"
plt.savefig(png, bbox_inches='tight')
plt.close(fig)
stat={}
hdul = fits.open("../products/eUDS.dr12.cross.fits")
tab = hdul[1].data
hdul.close()
print(len(np.unique(tab['ID'])))
for rec in tab:
sid=rec['ID']
if sid in stat.keys():
stat[sid]=stat[sid]+1
else:
stat[sid]=1
unique=0
double=0
triple=0
for key in stat.keys():
if(stat[key]==1):
unique=unique+1
if(stat[key]==2):
double=double+1
if(stat[key]==3):
triple=triple+1
print("unique: {}, double: {}. triple: {}".format(unique, double, triple))
if(do_euds_dr12_diff==True):
# read forced first
# fieldnames = ['euds_det_like', 'euds_flux', 'euds_flux_err', 'dr12_flux', 'dr12_flux_err', 'ratio']
filename="../products/eUDS_4XMM-DR12.flux.csv"
df = pandas.read_csv(filename)
# calculate difference similar to Bruner
threshold=5e-14
# forced catalog contains CONF flag, take it to remove from histogram
hdul = fits.open("../products/eUDS_4XMM-DR12.fits")
forced = hdul[1].data
fcat={}
for rec in forced:
key=rec['DR12_SRCID']
fcat[key]={'conf':rec['CONF'],}
# read cross-match results (not forced)
hdul = fits.open('../products/eUDS.dr12.cross.fits')
tb = hdul[1].data
cross_diff=[]
cross_ratio=[]
mean=0.0
count=0
for ind,s in enumerate(tb):
key=rec['DR12_SRCID']
#if not (tb[ind]['dr12_flux']>threshold and tb[ind]['src_flux']>threshold):
if not (tb[ind]['dr12_flux']>threshold):
continue
ape_flux=(tb[ind]['ape_cts']-tb[ind]['ape_bkg'])/tb[ind]['ape_exp']/ecf[index]
cross_dr12_flux=(tb[ind]['dr12_flux'])
cross_dr12_flux_error=(tb[ind]['dr12_flux_error'])
cross_euds_flux=(tb[ind]['src_flux'])
#cross_euds_flux=ape_flux
cross_euds_flux_error=(tb[ind]['src_flux_error'])
print(cross_euds_flux,cross_euds_flux_error,tb[ind]['ape_cts'],tb[ind]['det_like'])
d=(cross_dr12_flux - cross_euds_flux) / np.sqrt(cross_dr12_flux_error**2 + cross_euds_flux_error**2)
#if(d < -15):
# continue
r=cross_euds_flux/cross_dr12_flux
cross_diff.append(d)
cross_ratio.append(r)
#if(d < -15.0):
#print("GGG",d,r,cross_euds_flux,cross_dr12_flux)
#print(tb[ind]['DR12_NAME'],tb[ind]['DR12_RA'],tb[ind]['DR12_DEC'])
mean=mean + (cross_euds_flux/cross_dr12_flux)
count=count+1
print("min={:.2f}, max={:.2f}, mean={:.2f}, median={:.2f}, std={:.2f} N={}".format(min(cross_diff),
max(cross_diff),
np.mean(cross_diff),
np.median(cross_diff),
np.std(cross_diff),
len(cross_diff)))
print("ratio mean",mean/count)
print("ratio median",np.median(cross_ratio))
nbin=50
bins=np.linspace(-30,30, nbin)
fig, ax = plt.subplots()
for axis in ['top','bottom','left','right']:
ax.spines[axis].set_linewidth(1)
ax.tick_params(axis="both", width=1, labelsize=14)
plt.hist(cross_diff, bins=bins,histtype='step', color='green', linewidth=1, linestyle='solid', density=True)
#x = np.arange(-10, 10, 0.001)
#plot normal distribution with mean 0 and standard deviation 1
#plt.plot(x, norm.pdf(x, 0, 1), color='red', linewidth=2)
plt.ylabel('Relative fraction',fontsize=14, fontweight='normal')
plt.xlabel('(F$_{XMM}$-F$_{eUDS}$)/$\sqrt{\Delta F_{XMM}^{2}+\Delta F_{eUDS}^{2}}$',fontsize=14, fontweight='normal')
plt.grid(visible=True)
plt.xscale('linear')
plt.yscale('linear')
ax.set_xlim([-31, 31])
ax.set_ylim([0, 0.2])
plt.savefig("../products/cross-match_diff.png", bbox_inches='tight')
plt.close(fig)
nbin=200
bins=np.linspace(-1,1.0, nbin)
fig, ax = plt.subplots()
for axis in ['top','bottom','left','right']:
ax.spines[axis].set_linewidth(1)
ax.tick_params(axis="both", width=1, labelsize=14)
plt.hist(cross_ratio, bins=bins, histtype='step', color='green', linewidth=1, linestyle='solid', density=False)
#x = np.arange(-10, 10, 0.001)
#plot normal distribution with mean 0 and standard deviation 1
#plt.plot(x, norm.pdf(x, 0, 1), color='red', linewidth=2)
plt.xlabel('eUDS and 4XMM-DR12 flux ratio',fontsize=14, fontweight='normal')
plt.ylabel('Relative fraction',fontsize=14, fontweight='normal')
plt.grid(visible=True)
plt.xscale('linear')
plt.yscale('linear')
plt.savefig("../products/cross-match_ratio.png", bbox_inches='tight')
plt.close(fig)
if(do_print_ecf==True):
filename='../data/ECF/ecf_tbabspow_g2nh0.02.pkl'
with open(filename, 'rb') as f:
ecf_table = pickle.load(f)
"""
for key in table.keys():
print("{} --> {}".format(key,table[key]))
"""
print(ecf_table[(0.3,2.3)])
print(ecf_table[(0.3,0.6)])
print(ecf_table[(0.6,2.3)])
print(ecf_table[(2.3,5.0)])
print(ecf_table[(5.0,8.0)])
print()
print(ecf_table[(0.5,1.0)]) # 4XMM-DR12 EP2 band
print(ecf_table[(1.0,2.0)]) # 4XMM-DR12 EP3 band
if(do_euds_dr12_stat==True):
dr12_stat(infile='../products/eUDS_4XMM-DR12.fits',
xmmslim='../data/4XMM-DR12/4XMM_DR12cat_slim_v1.0_UDS.fits.catalog',
xmmlim=None,
outfile_reg='../products/dr12_fluxlim.reg')

View File

@@ -0,0 +1,55 @@
import glob, sys
from astropy.io import fits
import statistics
import pandas as pd
import numpy as np
import csv
colnames=['Match', 'Ref', 'Dup', 'RA', 'Dec', 'Incl']
flist=glob.glob('../products/tm[1,5,6,7]*en0*src.fits')
total1=0
total2=0
for f in flist:
hdul = fits.open(f)
try:
table=hdul[1].data['RADEC_ERR']
except:
continue
hdul.close()
dref=f.replace("src.fits","ref.fits")
hdul = fits.open(dref)
try:
rtable=hdul[1].data['RA']
except:
continue
hdul.close()
err=[]
err10=[]
dfile=f.replace("shu2019.src.fits","xfm.log.dat.awk")
with open(dfile) as csvfile:
spamreader = csv.reader(csvfile, delimiter=' ')
total=0
for row in spamreader:
if(row[5] == 'N'):
continue
for ii,values in np.ndenumerate(rtable):
if(int(row[2]) == int(ii[0])):
total=total+1
#print(">>",row[5],rtable[ii],table[ii],ii[0])
if(table[ii]>0.0):
err.append(table[ii])
if(table[ii]>10.0):
err10.append(table[ii])
total1=total1+total
total2=total2+len(err)
#print("{} MIN {:.2f} MAX {:.2f} ({}/{})".format(f[12:15],min(err),max(err),len(err10),len(err)))
print("{} MIN {:.2f} MAX {:.2f} ({}/{})".format(f,min(err),max(err),len(err10),len(err)))
#sys.exit()
#print(total1,total2)

View File

@@ -0,0 +1,67 @@
import glob, sys
from astropy.io import fits
import statistics
import pandas as pd
import numpy as np
import csv
from uds.config import *
colnames=['Match', 'Ref', 'Dup', 'RA', 'Dec', 'Incl']
flist=glob.glob('../products/tm[1,5,6,7]*en0*.xfm')
total1=0
total2=0
for f in flist:
pos = f.find("_SourceCatalog")
key=f[12:pos]
hdul = fits.open(f)
try:
tab=hdul[1].data
except:
continue
hdul.close()
dsrc=f.replace(".xfm",".shu2019.src.fits")
hdul = fits.open(dsrc)
try:
hdr=hdul[0].header
cdelt=hdr['CDELT2']*3600
except:
continue
hdul.close()
a11=tab[0]['a11']
a12=tab[0]['a12']
a22=tab[0]['a22']
a21=tab[0]['a21']
x_scale=tab[0]['x_scale']
y_scale=tab[0]['y_scale']
t1=tab[0]['t1']*cdelt
t2=tab[0]['t2']*cdelt
sx1=np.sign(a11)*np.sqrt(a11**2 + a12**2)
sy1=np.sign(a22)*np.sqrt(a21**2 + a22**2)
sx2=np.sign(a11)*np.sqrt(a11**2 + a21**2)
sy2=np.sign(a22)*np.sqrt(a12**2 + a22**2)
a1 = np.arctan2(a12/sx1,a11/sy2) * 180 / np.pi * 60
a2 = np.arctan2(a12/sx1,a22/sy2) * 180 / np.pi * 60
b1 = np.arctan2(a21,a11) * 180 / np.pi * 60
b2 = np.arctan2(a21,a22) * 180 / np.pi * 60
det=a11*a22-a12*a21
alpha=355*np.pi/180
a3 = np.arctan2(np.sin(alpha),np.cos(alpha)) * 180 / np.pi
print("{:+.8} {:+.8}".format(a11,a12))
print("{:+.8} {:+.8}".format(a21,a22))
#print("{} d {:.10f} s {:.8f} {:.8f} {:.8f} {:.8f} | {:+.8f} {:+.8f} {:+.8f} {:+.8f} t {:+.2f} {:+.2f}".format(obslist[key],np.sqrt(det)*cdelt,sx1*cdelt,sx2*cdelt,sy1*cdelt,sy2*cdelt,a1,a2,b1,b2,t1,t2))
#print("{} d {:.10f} s {:.8f} {:.8f} {:.8f} {:.8f} | {:+.8f} {:+.8f} {:+.8f} {:+.8f} t {:+.2f} {:+.2f}".format(obslist[key],np.sqrt(det)*cdelt,sx1*cdelt,sx2*cdelt,sy1*cdelt,sy2*cdelt,a1,a2,b1,b2,t1,t2))