from django.core.management.base import BaseCommand, CommandError from datetime import date from heasarc.models import INPUT_DATA_DIR import datetime from django.utils import timezone import astropy from astropy.io import ascii import pandas as pd import pymysql from sqlalchemy import create_engine import numpy.ma as ma from heasarc.tdat import tDat from heasarc.models import HeasarcTable, TableColumn, HeasarcCSC, HeasarcObjectClass from heasarc.models import NSIDE_SOURCES, ORDER from astropy_healpix import HEALPix from astropy.coordinates import SkyCoord # High-level coordinates from astropy.coordinates import ICRS, Galactic, FK4, FK5 # Low-level frames from astropy.coordinates import Angle, Latitude, Longitude # Angles import astropy.units as u def load_heasarc_table(filename): tdatfile=INPUT_DATA_DIR+'/dump/'+filename data = astropy.table.Table.read(tdatfile, format='ascii.tdat',encoding='latin1') keywords = data.meta['keywords'] for key, value in keywords.items(): print(key, '->', value) try: table=HeasarcTable.objects.get(name__exact=keywords['table_name']) table.delete() except: pass table_name=keywords['table_name'] table = HeasarcTable(name=keywords['table_name']) table.description=keywords['table_description'].replace('\"', '') table.document_url=keywords['table_document_url'] if 'default_search_radius' in keywords: table.search_radius=int(keywords['default_search_radius']) if 'frequency_regime' in keywords: table.frequency_regime=keywords['frequency_regime'] table.observatory_name=keywords['observatory_name'] table.security=keywords['table_security'] if 'table_author' in keywords: table.author=keywords['table_author'] if 'catalog_bibcode' in keywords: table.bibcode=keywords['catalog_bibcode'] if 'declination' in keywords: table.declination=keywords['declination'].replace('@', '') if 'right_ascension' in keywords: table.right_ascension=keywords['right_ascension'].replace('@', '') table.observatory_name = keywords['observatory_name'] if 'parameter_defaults' in keywords: table.parameter_defaults = keywords['parameter_defaults'] table.save() cols = data.meta['cols'] for key, value in cols.items(): column = TableColumn(table=table) column.name=key column.tdat_type=value['type'] column.description=value['description'] column.save() print(key, '->', value) # convert data frame to pandas # df = data.to_pandas() # sql = 'DROP TABLE IF EXISTS '+table_name+';' # result = engine.execute(sql) # Insert whole DataFrame into MySQL # df.to_sql(table_name, con = engine, if_exists = 'append', chunksize = 200000) tables = HeasarcCSC.objects.all() tables.delete() hp = HEALPix(nside=NSIDE_SOURCES, order=ORDER, frame=FK5()) for item in data: #crd = SkyCoord(item['ra'], item['dec'], frame=FK5(), unit="deg") #healpix = hp.skycoord_to_healpix(crd) conf_flag='' if(item['conf_flag'] == 'NULL'): conf_flag = 'N' healpix = 0 ra = 0.0 dec = 0.0 if not (ma.is_masked(item['ra']) or ma.is_masked(item['dec'])): ra = float(item['ra']) dec = float(item['dec']) crd = SkyCoord(ra, dec, frame=FK5(), unit="deg") healpix = hp.skycoord_to_healpix(crd) obj = HeasarcCSC.objects.create(healpix=healpix, ra=ra, dec=dec, lii=item['lii'], bii=item['bii'], name=item['name'], significance=item['significance'], extent_flag=item['extent_flag'], conf_flag=conf_flag, error_ellipse_r0=item['error_ellipse_r0'], error_ellipse_r1=item['error_ellipse_r1'], error_ellipse_angle=item['error_ellipse_angle'], b_flux_ap=item['b_flux_ap'], b_flux_ap_hi=item['b_flux_ap_hi'], b_flux_ap_lo=item['b_flux_ap_lo'], m_flux_ap=item['m_flux_ap'], m_flux_ap_hi=item['m_flux_ap_hi'], m_flux_ap_lo=item['m_flux_ap_lo'], s_flux_ap = item['s_flux_ap'], s_flux_ap_hi = item['s_flux_ap_hi'], m_photflux_ap=item['m_photflux_ap'], m_photflux_ap_hi=item['m_photflux_ap_hi'], m_photflux_ap_lo=item['m_photflux_ap_lo'], s_photflux_ap=item['s_photflux_ap'], s_photflux_ap_hi=item['s_photflux_ap_hi'], s_photflux_ap_lo=item['s_photflux_ap_lo'],) obj.save() print('--> Successfully loaded "%s"' % table_name) pass class Command(BaseCommand): help = 'Initiates data dase' # def add_arguments(self, parser): # parser.add_argument('poll_id', nargs='+', type=int) def handle(self, *args, **options): load_heasarc_table('heasarc_csc.tdat.gz') self.stdout.write(self.style.SUCCESS('Done'))