spectra

scripts/03_show_image_mos.py

@@ -0,0 +1,68 @@
+#!/usr/bin/env python
+
+from pysas.wrapper import Wrapper as w
+import os, sys
+from os.path import dirname
+import inspect
+import glob
+
+import os.path
+from os import path
+import subprocess
+import numpy as np
+import matplotlib.pyplot as plt
+from astropy.io import fits
+from astropy.table import Table
+from matplotlib.colors import LogNorm
+
+import pyds9
+
+import arches
+from arches.utils import *
+from arches.config import *
+
+root_path=dirname(dirname(dirname(inspect.getfile(arches))))
+print("Arches root path: {}".format(root_path))
+
+archive_dir=root_path+'/data/archive'
+events_dir=root_path+'/data/processed'
+products_dir=root_path+'/products'
+ds9reg_dir=root_path+'/data/ds9reg'
+
+imos=1
+
+create_folder(products_dir)
+
+inargs = ['--version']
+t = w('sasver', inargs)
+t.run()
+
+files = glob.glob(archive_dir+'/*')
+
+for obsid in files:
+    obsid = os.path.basename(obsid)
+
+    work_dir = init_work_dir(obsid)
+
+    os.chdir(work_dir)
+    # EPIC_pn_gtiFilteredEvts.ds EPIC_MOS2_Image_0862470501.fit
+    search_str = f'{products_dir}/{obsid}/EPIC_MOS{imos}_Image_{obsid}.fit'
+    print(search_str)
+    epfiles = glob.glob(search_str)
+    if not (epfiles):
+        print("*** run 02_filter_flares_pn.py ***")
+        sys.exit()
+        
+    out_IMFile   = epfiles[0]
+
+    # Visualize the image with ds9
+
+    d = pyds9.DS9()
+    d.set("file "+out_IMFile)
+    d.set('cmap bb')
+    d.set('scale log')
+    d.set(f"region {ds9reg_dir}/arches.reg")
+
+    print(f'{obsid} MOS{imos}')
+    user_input = input()
+