forked from xmm/arches
150 lines
4.6 KiB
Python
Executable File
150 lines
4.6 KiB
Python
Executable File
#!/usr/bin/env python
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from pysas.wrapper import Wrapper as w
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import os, sys
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from os.path import dirname
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import inspect
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import glob
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import os.path
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from os import path
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import subprocess
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import numpy as np
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import matplotlib.pyplot as plt
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from astropy.io import fits
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from astropy.table import Table
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from matplotlib.colors import LogNorm
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import re
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import pyds9
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import arches
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from arches.utils import *
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from arches.config import *
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root_path=dirname(dirname(dirname(inspect.getfile(arches))))
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print("Arches root path: {}".format(root_path))
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archive_dir=root_path+'/data/archive'
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events_dir=root_path+'/data/processed'
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products_dir=root_path+'/products/sas'
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create_folder(products_dir)
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mosaic_dir=root_path+'/products/mosaic'
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create_folder(mosaic_dir)
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ds9reg_dir=root_path+'/data/ds9reg'
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inargs = ['--version']
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t = w('sasver', inargs)
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t.run()
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files = glob.glob(archive_dir+'/*')
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# run over energies
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for idx,e in enumerate(emin):
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label=f"_{idx}"
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e1=emin[idx]
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e2=emax[idx]
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# all MOS1
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m1_ima=[]
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m1_qpb=[]
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m1_exp=[]
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# all MOS2
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m2_ima=[]
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m2_qpb=[]
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m2_exp=[]
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# all MOS
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mos_ima=[]
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mos_qpb=[]
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mos_exp=[]
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# all PNs
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pn_ima=[]
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pn_qpb=[]
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pn_exp=[]
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# all MOS1,2,PN
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ima=[]
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qpb=[]
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exp=[]
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for obsid in files:
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obsid = os.path.basename(obsid)
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if(obsid in skip):
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continue
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work_dir = f'{products_dir}/{obsid}'
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for ikey,key in enumerate(['MOS1','MOS2','PN']):
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shortkey = key.replace("OS","")
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expkey=f'S00{ikey+1}'
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# sci and qpb image are produced by 06_sas_QPB.py
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sci_image=work_dir+f'/EPIC_{key}_sci_image{label}.fits'
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test_file(sci_image)
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qpb_image=work_dir+f'/EPIC_{key}_qpb_image{label}.fits'
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test_file(qpb_image)
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# exposure image is produced by eimageget (07_sas_eimageget.py)
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# example: P0862470801PNS003_ima_4exp.fits
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exp_image=work_dir+f'/P{obsid}{shortkey}{expkey}_ima{label}exp.fits'
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test_file(exp_image)
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ima.append(sci_image)
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qpb.append(qpb_image)
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exp.append(exp_image)
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if(key=='PN'):
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pn_ima.append(sci_image)
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pn_qpb.append(qpb_image)
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pn_exp.append(exp_image)
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if(key=='MOS1'):
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m1_ima.append(sci_image)
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m1_qpb.append(qpb_image)
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m1_exp.append(exp_image)
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if(key=='MOS2'):
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m2_ima.append(sci_image)
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m2_qpb.append(qpb_image)
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m2_exp.append(exp_image)
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if(key=='MOS1' or key=='MOS2'):
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mos_ima.append(sci_image)
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mos_qpb.append(qpb_image)
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mos_exp.append(exp_image)
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run_mosaic(outfile_cts=mosaic_dir+f'/m1_cts{label}.fits',
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outfile_exp=mosaic_dir+f'/m1_exp{label}.fits',
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outfile_qpb=mosaic_dir+f'/m1_qpb{label}.fits',
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outfile_sub=mosaic_dir+f'/m1_sub{label}.fits',
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outfile_flx=mosaic_dir+f'/m1_flx{label}.fits',
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outfile_pix=mosaic_dir+f'/m1_pix{label}.fits',
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cts=m1_ima,qpb=m1_qpb,exp=m1_exp)
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run_mosaic(outfile_cts=mosaic_dir+f'/m2_cts{label}.fits',
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outfile_exp=mosaic_dir+f'/m2_exp{label}.fits',
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outfile_qpb=mosaic_dir+f'/m2_qpb{label}.fits',
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outfile_sub=mosaic_dir+f'/m2_sub{label}.fits',
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outfile_flx=mosaic_dir+f'/m2_flx{label}.fits',
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cts=m2_ima,qpb=m2_qpb,exp=m2_exp)
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run_mosaic(outfile_cts=mosaic_dir+f'/mos_cts{label}.fits',
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outfile_exp=mosaic_dir+f'/mos_exp{label}.fits',
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outfile_qpb=mosaic_dir+f'/mos_qpb{label}.fits',
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outfile_sub=mosaic_dir+f'/mos_sub{label}.fits',
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outfile_flx=mosaic_dir+f'/mos_flx{label}.fits',
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cts=mos_ima,qpb=mos_qpb,exp=mos_exp)
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run_mosaic(outfile_cts=mosaic_dir+f'/pn_cts{label}.fits',
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outfile_exp=mosaic_dir+f'/pn_exp{label}.fits',
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outfile_qpb=mosaic_dir+f'/pn_qpb{label}.fits',
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outfile_sub=mosaic_dir+f'/pn_sub{label}.fits',
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outfile_flx=mosaic_dir+f'/pn_flx{label}.fits',
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cts=pn_ima,qpb=pn_qpb,exp=pn_exp)
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run_mosaic(outfile_cts=mosaic_dir+f'/cts{label}.fits',
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outfile_exp=mosaic_dir+f'/exp{label}.fits',
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outfile_qpb=mosaic_dir+f'/qpb{label}.fits',
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outfile_sub=mosaic_dir+f'/sub{label}.fits',
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outfile_flx=mosaic_dir+f'/flx{label}.fits',
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cts=ima,qpb=qpb,exp=exp)
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